Overview | 1. Reading subtitles | From a file | Attaching metadata at read time | From a character vector | 2. Exploring the subtitles object | Quick summary | Raw text extraction | Accessing individual columns | 3. Cleaning subtitles | Remove formatting tags | Remove closed captions | Remove arbitrary patterns | Chaining cleaning steps | 4. Combining subtitles | Collapsing multiple objects into one | Keeping a list structure | 5. Reading an entire series | 6. Adjusting timecodes | 7. Writing subtitles back to disk | 8. Text analysis with tidytext | Tokenising into words | Tokenising into sentences or n-grams | Word frequency | 9. Advanced: cross-episode analysis | TF-IDF across episodes | Dialogue timeline | Summary

Loading packages | Loading data | Cropping sequences | Consensus sequences and phylogeny | Clustering sequences | Exporting data

Getting data from NCBI Genbank | Getting data from BOLD | Merging data from different sources | References

Installing and loading the package | Reading data | Reading data from a file | Setting fields | Cleaning taxonomic names and DNA sequences | Missing taxonomic information | Extra information appended to taxonomic names | A note on false positive and false negative | Cleaning DNA sequences | Other cleaning functions | Filtering records | Visualizing the reference library | Creating a report | Exporting the data

First steps | Operations on sequences | Biological conversion among classes | String operations | Detection and selection | Remove and replace

Data | Visualizing the data | Measuring and testing the signal for each trait and different methods | Assessing the behavior of these methods with this phylogeny along a Brownian-Motion influence gradient | Assessing the signal depth with correlograms | Locating the signal with LIPA

Data | Basics | Colors | Advanced tuning