Package: bioseq
Type: Package
Title: A Toolbox for Manipulating Biological Sequences
Version: 0.1.5
Authors@R: 
    c(person(given = "Francois",
             family = "Keck",
             role = c("aut", "cre", "cph"),
             email = "francois.keck@gmail.com",
             comment = c(ORCID = "0000-0002-3323-4167"))
    )
Description: Classes and functions to work with biological sequences
        (DNA, RNA and amino acid sequences). Implements S3
        infrastructure to work with biological sequences as described
        in Keck (2020) <doi:10.1111/2041-210X.13490>. Provides a
        collection of functions to perform biological conversion among
        classes (transcription, translation) and basic operations on
        sequences (detection, selection and replacement based on
        positions or patterns). The package also provides functions to
        import and export sequences from and to other package formats.
License: GPL-3
URL: https://fkeck.github.io/bioseq/
BugReports: https://github.com/fkeck/bioseq/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.1.0)
Imports: methods, vctrs, tibble, ape, crayon, dplyr, pillar, stringi,
        stringr, stringdist, readr, rlang
Suggests: knitr, rmarkdown, testthat (>= 2.1.0), covr
VignetteBuilder: knitr
RoxygenNote: 7.2.1
Config/pak/sysreqs: libicu-dev libx11-dev
Repository: https://fkeck.r-universe.dev
Date/Publication: 2025-09-29 14:24:15 UTC
RemoteUrl: https://github.com/fkeck/bioseq
RemoteRef: HEAD
RemoteSha: 90e138a8e75e51eadc59512b779741cd6bd16d0f
NeedsCompilation: no
Packaged: 2026-07-03 20:09:13 UTC; root
Author: Francois Keck [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-3323-4167>)
Maintainer: Francois Keck <francois.keck@gmail.com>